Andrew D. Fox

X I am a PhD student in the graduate program within the Department of Computer Science at Tufts University. My research involves the application of computational systems biology methods to the problem of inferring biological knowledge through integrative analysis of large-scale genomic data. I am a member of the Bioinformatics and Computational Biology research group at Tufts. My research advisor is Prof. Donna Slonim. Here is my current CV. Contact:    Andrew  dot ;Fox   at   tufts, dot ;edu

Publications

• A.D. Fox, D. Taylor and D.K. Slonim (2009) High Throughput Interaction Data Reveals Degree Conservation of Hub Proteins, Pacific Symposium on Biocomputing, 14:391-402. [Link]   [PDF]
  
  
• A.D. Fox, W.A. Baumgartner, H.L. Johnson, L.E. Hunter and D.K. Slonim (2010) Mining Protein-Protein Interactions from GeneRIFs with OpenDMAP, Lecture Notes in Computer Science, Linking Literature, Information, and Knowledge for Biology, 6004:45-55. [Link]
  
  
• A. Fox, B.J. Hescott, A. Blumer and D.K. Slonim. (2010) Connectedness of PPI Network Neighborhoods Identifies Regulatory Hubs (in preparation).

Conference Presentations

• A.D. Fox, D. Taylor, and D.K. Slonim. (2009) Degree Conservation in Protein Interaction Networks, Pacific Symposium on Biocomputing. [PDF]
  
  
• A.D. Fox, W.A. Baumgartner, H.L. Johnson, L.E. Hunter, D.K. Slonim. (2009) Ontology-driven Concept Recognition for Protein-Protein Interaction Extraction, 17^th International Conference on Intelligent Systems for Molecular Biology / European Conference on Computational Biology (ISMB/ECCB). [PDF]
  
  

Conference Posters

• A.D. Fox, D.K. Slonim (2007) Regulatory Hub Identification in Yeast, RECOMB Satellite Conference on Regulatory Genomics [PDF]